IL_9HM0_059

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

9HM0|1|AA|C|1955, 9HM0|1|AA|U|2880, 9HM0|1|AA|A|2881

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_059 not in the Motif Atlas

Geometric match to IL_8B0X_140

Geometric discrepancy: 0.1006

The information below is about IL_8B0X_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

9HM0|1|AA|A|1954
9HM0|1|AA|C|1955
9HM0|1|AA|G|1956
*
9HM0|1|AA|C|2879
9HM0|1|AA|U|2880
9HM0|1|AA|A|2881
9HM0|1|AA|U|2882

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL3m

Chain OO

Large ribosomal subunit protein uL22m

Chain WW

Large ribosomal subunit protein bL32m