IL_9HM0_060

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUGC*GCUA

Length

9 nucleotides

Bulged bases

9HM0|1|AA|U|1968

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_060 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.1863

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9HM0|1|AA|U|1966
9HM0|1|AA|A|1967
9HM0|1|AA|U|1968
9HM0|1|AA|G|1969
9HM0|1|AA|C|1970
*
9HM0|1|AA|G|2707
9HM0|1|AA|C|2708
9HM0|1|AA|U|2709
9HM0|1|AA|A|2710

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain DD

Large ribosomal subunit protein uL4m

Chain JJ

Large ribosomal subunit protein uL15m