IL_9HM0_065

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UA*UUA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_065 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.3273

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

9HM0|1|AA|U|2186
9HM0|1|AA|A|2187
*
9HM0|1|AA|U|2201
9HM0|1|AA|U|2202
9HM0|1|AA|A|2203

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain SS

Large ribosomal subunit protein bL28m