IL_9HM0_084

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAGUAC*GGACCA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_084 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1483

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9HM0|1|AA|U|2919
9HM0|1|AA|U|2920
9HM0|1|AA|A|2921
9HM0|1|AA|G|2922
9HM0|1|AA|U|2923
9HM0|1|AA|A|2924
9HM0|1|AA|C|2925
*
9HM0|1|AA|G|2930
9HM0|1|AA|G|2931
9HM0|1|AA|A|2932
9HM0|1|AA|C|2933
9HM0|1|AA|C|2934
9HM0|1|AA|A|2935

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain FF

Large ribosomal subunit protein uL6m