IL_9HM0_085

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCCAU*AAG

Length

8 nucleotides

Bulged bases

9HM0|1|AA|A|3062

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_085 not in the Motif Atlas

Homologous match to IL_7A0S_095

Geometric discrepancy: 0.4161

The information below is about IL_7A0S_095

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

9HM0|1|AA|C|2947
9HM0|1|AA|C|2948
9HM0|1|AA|C|2949
9HM0|1|AA|A|2950
9HM0|1|AA|U|2951
*
9HM0|1|AA|A|3061
9HM0|1|AA|A|3062
9HM0|1|AA|G|3063

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL3m

Chain II

Large ribosomal subunit protein uL14m

Chain MM

Large ribosomal subunit protein bL19m