IL_9HM0_090

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAUAAA*UGAAGU

Length

12 nucleotides

Bulged bases

9HM0|1|AA|A|3102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_090 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1338

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9HM0|1|AA|A|3073
9HM0|1|AA|A|3074
9HM0|1|AA|U|3075
9HM0|1|AA|A|3076
9HM0|1|AA|A|3077
9HM0|1|AA|A|3078
*
9HM0|1|AA|U|3099
9HM0|1|AA|G|3100
9HM0|1|AA|A|3101
9HM0|1|AA|A|3102
9HM0|1|AA|G|3103
9HM0|1|AA|U|3104

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 00

Large ribosomal subunit protein bL36m

Chain FF

Large ribosomal subunit protein uL6m

Chain HH

Large ribosomal subunit protein uL13m