IL_9HM0_091

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAUC*GU

Length

6 nucleotides

Bulged bases

9HM0|1|AA|A|3124, 9HM0|1|AA|U|3125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_091 not in the Motif Atlas

Geometric match to IL_8ZAU_001

Geometric discrepancy: 0.2522

The information below is about IL_8ZAU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

9HM0|1|AA|A|3123
9HM0|1|AA|A|3124
9HM0|1|AA|U|3125
9HM0|1|AA|C|3126
*
9HM0|1|AA|G|3259
9HM0|1|AA|U|3260

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL3m

Chain LL

Large ribosomal subunit protein bL17m

Chain MM

Large ribosomal subunit protein bL19m

Chain aa

Large ribosomal subunit protein mL58