IL_9HM0_101

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CG*UAUG

Length

6 nucleotides

Bulged bases

9HM0|1|r|A|100, 9HM0|1|r|U|101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_101 not in the Motif Atlas

Geometric match to IL_4YAZ_007

Geometric discrepancy: 0.1182

The information below is about IL_4YAZ_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_71421.3

Basepair signature

cWW-cWW

Number of instances in this motif group

33

Unit IDs

9HM0|1|r|C|74
9HM0|1|r|G|75
*
9HM0|1|r|U|99
9HM0|1|r|A|100
9HM0|1|r|U|101
9HM0|1|r|G|102

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 2

Small ribosomal subunit protein mS41

Chain 5

Small ribosomal subunit protein mS27