IL_9HM0_103

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAUU*AGC

Length

8 nucleotides

Bulged bases

9HM0|1|r|A|132, 9HM0|1|r|U|133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_103 not in the Motif Atlas

Geometric match to IL_8B0X_009

Geometric discrepancy: 0.1958

The information below is about IL_8B0X_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

9HM0|1|r|G|130
9HM0|1|r|A|131
9HM0|1|r|A|132
9HM0|1|r|U|133
9HM0|1|r|U|134
*
9HM0|1|r|A|235
9HM0|1|r|G|236
9HM0|1|r|C|237

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16m

Chain Q

Small ribosomal subunit protein uS17m

Chain V

Small ribosomal subunit protein mS26