IL_9HM0_107
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUUUAG*CAACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 9HM0|1|r|U|248, 9HM0|1|r|C|285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HM0_107 not in the Motif Atlas
- Homologous match to IL_6CZR_123
- Geometric discrepancy: 0.2848
- The information below is about IL_6CZR_123
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.2
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9HM0|1|r|G|246
9HM0|1|r|U|247
9HM0|1|r|U|248
9HM0|1|r|U|249
9HM0|1|r|A|250
9HM0|1|r|G|251
*
9HM0|1|r|C|282
9HM0|1|r|A|283
9HM0|1|r|A|284
9HM0|1|r|C|285
9HM0|1|r|G|286
9HM0|1|r|A|287
9HM0|1|r|U|288
9HM0|1|r|C|289
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS12m
- Chain O
- Small ribosomal subunit protein uS15m
- Chain Q
- Small ribosomal subunit protein uS17m
Coloring options: