IL_9HM0_110

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAU*AGAAC

Length

8 nucleotides

Bulged bases

9HM0|1|r|A|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_110 not in the Motif Atlas

Homologous match to IL_6CZR_125

Geometric discrepancy: 0.5734

The information below is about IL_6CZR_125

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_99460.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

9HM0|1|r|G|297
9HM0|1|r|A|298
9HM0|1|r|U|299
*
9HM0|1|r|A|310
9HM0|1|r|G|311
9HM0|1|r|A|312
9HM0|1|r|A|313
9HM0|1|r|C|314

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 6

Small ribosomal subunit protein mS45

Chain P

Small ribosomal subunit protein bS16m

Chain V

Small ribosomal subunit protein mS26