IL_9HM0_111

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAC*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_111 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.1485

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9HM0|1|r|U|323
9HM0|1|r|G|324
9HM0|1|r|A|325
9HM0|1|r|C|326
*
9HM0|1|r|G|338
9HM0|1|r|U|339
9HM0|1|r|C|340
9HM0|1|r|A|341

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 2

Small ribosomal subunit protein mS41

Chain II

Large ribosomal subunit protein uL14m

Chain MM

Large ribosomal subunit protein bL19m