IL_9HM0_118
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUGCCAG*CGGUAACAC
- Length
- 16 nucleotides
- Bulged bases
- 9HM0|1|r|A|646, 9HM0|1|r|C|648, 9HM0|1|r|A|649
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HM0_118 not in the Motif Atlas
- Homologous match to IL_6CZR_133
- Geometric discrepancy: 0.4711
- The information below is about IL_6CZR_133
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9HM0|1|r|G|629
9HM0|1|r|U|630
9HM0|1|r|G|631
9HM0|1|r|C|632
9HM0|1|r|C|633
9HM0|1|r|A|634
9HM0|1|r|G|635
*
9HM0|1|r|C|642
9HM0|1|r|G|643
9HM0|1|r|G|644
9HM0|1|r|U|645
9HM0|1|r|A|646
9HM0|1|r|A|647
9HM0|1|r|C|648
9HM0|1|r|A|649
9HM0|1|r|C|650
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS3m
- Chain L
- Small ribosomal subunit protein uS12m
- Chain X
- Small ribosomal subunit protein mS33
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