IL_9HM0_121
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HM0_121 not in the Motif Atlas
- Homologous match to IL_6CZR_135
- Geometric discrepancy: 0.1788
- The information below is about IL_6CZR_135
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9HM0|1|r|C|689
9HM0|1|r|G|690
9HM0|1|r|U|691
9HM0|1|r|A|692
9HM0|1|r|G|693
*
9HM0|1|r|U|822
9HM0|1|r|G|823
9HM0|1|r|A|824
9HM0|1|r|G|825
9HM0|1|r|G|826
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS12m
- Chain O
- Small ribosomal subunit protein uS15m
- Chain Q
- Small ribosomal subunit protein uS17m
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