IL_9HM0_127

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGUAG*UU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_127 not in the Motif Atlas

Homologous match to IL_6CZR_144

Geometric discrepancy: 0.1658

The information below is about IL_6CZR_144

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

9HM0|1|r|A|839
9HM0|1|r|G|840
9HM0|1|r|U|841
9HM0|1|r|A|842
9HM0|1|r|G|843
*
9HM0|1|r|U|869
9HM0|1|r|U|870

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain BB

Large ribosomal subunit protein uL2m

Chain K

Small ribosomal subunit protein uS11m