IL_9HM0_131

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUUA*UUUC

Length

9 nucleotides

Bulged bases

9HM0|1|r|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_131 not in the Motif Atlas

Geometric match to IL_8P9A_355

Geometric discrepancy: 0.1871

The information below is about IL_8P9A_355

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9HM0|1|r|G|990
9HM0|1|r|G|991
9HM0|1|r|U|992
9HM0|1|r|U|993
9HM0|1|r|A|994
*
9HM0|1|r|U|1456
9HM0|1|r|U|1457
9HM0|1|r|U|1458
9HM0|1|r|C|1459

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain Z

Small ribosomal subunit protein mS37