IL_9HM0_138

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

9HM0|1|r|A|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_138 not in the Motif Atlas

Homologous match to IL_6CZR_156

Geometric discrepancy: 0.2817

The information below is about IL_6CZR_156

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9HM0|1|r|U|1107
9HM0|1|r|G|1108
*
9HM0|1|r|C|1227
9HM0|1|r|A|1228
9HM0|1|r|A|1229

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3m

Chain J

Small ribosomal subunit protein uS10m

Chain N

Small ribosomal subunit protein uS14m