IL_9HM0_146
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UAAUC*GAUUA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HM0_146 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.2956
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
9HM0|1|r|U|1378
9HM0|1|r|A|1379
9HM0|1|r|A|1380
9HM0|1|r|U|1381
9HM0|1|r|C|1382
*
9HM0|1|r|G|1391
9HM0|1|r|A|1392
9HM0|1|r|U|1393
9HM0|1|r|U|1394
9HM0|1|r|A|1395
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain M
- Small ribosomal subunit protein uS13m
- Chain N
- Small ribosomal subunit protein uS14m
- Chain S
- Small ribosomal subunit protein uS19m
- Chain VV
- Large ribosomal subunit protein bL31m
- Chain X
- Small ribosomal subunit protein mS33
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