IL_9HQV_015
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GAGCAC*GGGAAC
- Length
- 12 nucleotides
- Bulged bases
- 9HQV|1|SJ|G|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_015 not in the Motif Atlas
- Geometric match to IL_2NPY_001
- Geometric discrepancy: 0.3754
- The information below is about IL_2NPY_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80926.1
- Basepair signature
- cWW-cWW-tSH-tHS-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
9HQV|1|SJ|G|44
9HQV|1|SJ|A|45
9HQV|1|SJ|G|46
9HQV|1|SJ|C|47
9HQV|1|SJ|A|48
9HQV|1|SJ|C|49
*
9HQV|1|SJ|G|65
9HQV|1|SJ|G|66
9HQV|1|SJ|G|67
9HQV|1|SJ|A|68
9HQV|1|SJ|A|69
9HQV|1|SJ|C|70
Current chains
- Chain SJ
- SSU-10
Nearby chains
- Chain Bg
- Putative ribosomal protein S11
- Chain Bo
- Ribosomal protein, bS21m
- Chain SG
- SSU-7
- Chain SI
- SSU-9
- Chain SU
- SSU-21
- Chain Ul
- GLY-ARG-SER-LYS-VAL-LEU-ILE-ARG-ARG-LEU-LYS-GLU-ARG-ALA-LYS-LYS-GLU-ALA-GLU-LYS-LYS-ALA
- Chain Yg
- Thioredoxin domain-containing protein
- Chain Yu
- mS137
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