IL_9HQV_030
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 9HQV|1|SR|C|19, 9HQV|1|SU|A|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_030 not in the Motif Atlas
- Geometric match to IL_8CRE_466
- Geometric discrepancy: 0.0485
- The information below is about IL_8CRE_466
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18228.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
9HQV|1|SR|C|18
9HQV|1|SR|C|19
9HQV|1|SR|G|20
*
9HQV|1|SU|C|17
9HQV|1|SU|A|18
9HQV|1|SU|A|19
9HQV|1|SU|G|20
Current chains
- Chain SR
- SSU-18
- Chain SU
- SSU-21
Nearby chains
- Chain Bx
- Mitochondrial mRNA-processing protein COX24 C-terminal domain-containing protein
- Chain SK
- SSU-11
- Chain TP
- tRNA E-site
- Chain Yr
- Acylphosphatase-like domain-containing protein
Coloring options: