IL_9HYM_009
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUAAG*CGUUAUAAC
- Length
- 14 nucleotides
- Bulged bases
- 9HYM|1|b|U|100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HYM_009 not in the Motif Atlas
- Homologous match to IL_7A0S_004
- Geometric discrepancy: 0.5998
- The information below is about IL_7A0S_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
9HYM|1|b|G|81
9HYM|1|b|U|82
9HYM|1|b|A|83
9HYM|1|b|A|84
9HYM|1|b|G|85
*
9HYM|1|b|C|97
9HYM|1|b|G|98
9HYM|1|b|U|99
9HYM|1|b|U|100
9HYM|1|b|A|101
9HYM|1|b|U|102
9HYM|1|b|A|103
9HYM|1|b|A|104
9HYM|1|b|C|105
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein uL29
- Chain u
- Large ribosomal subunit protein uL24
Coloring options: