IL_9HYM_028
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HYM_028 not in the Motif Atlas
- Geometric match to IL_8B0X_090
- Geometric discrepancy: 0.0911
- The information below is about IL_8B0X_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_94128.1
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9HYM|1|b|G|856
9HYM|1|b|G|857
9HYM|1|b|G|858
9HYM|1|b|G|859
9HYM|1|b|U|860
9HYM|1|b|A|861
9HYM|1|b|G|862
*
9HYM|1|b|C|915
9HYM|1|b|G|916
9HYM|1|b|A|917
9HYM|1|b|A|918
9HYM|1|b|U|919
9HYM|1|b|A|920
9HYM|1|b|C|921
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein uL30
- Chain a
- 5S ribosomal RNA; 5S rRNA
- Chain m
- 50S ribosomal protein L16
- Chain y
- Large ribosomal subunit protein bL27
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