IL_9HYM_100
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGUUC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 9HYM|1|b|U|2689, 9HYM|1|b|U|2690
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HYM_100 not in the Motif Atlas
- Homologous match to IL_7A0S_096
- Geometric discrepancy: 0.1976
- The information below is about IL_7A0S_096
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_82016.1
- Basepair signature
- cWW-L-tHS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
9HYM|1|b|U|2687
9HYM|1|b|G|2688
9HYM|1|b|U|2689
9HYM|1|b|U|2690
9HYM|1|b|C|2691
*
9HYM|1|b|G|2718
9HYM|1|b|G|2719
9HYM|1|b|U|2720
9HYM|1|b|A|2721
9HYM|1|b|G|2722
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain n
- Large ribosomal subunit protein bL17
- Chain p
- Large ribosomal subunit protein bL19
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