IL_9I1W_147

3D structure

PDB id

9I1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AUCCC*GCUCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I1W_147 not in the Motif Atlas

Homologous match to IL_4V9F_104

Geometric discrepancy: 0.1754

The information below is about IL_4V9F_104

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.12

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

12

Unit IDs

9I1W|1|3|A|32
9I1W|1|3|U|33
9I1W|1|3|C|34
9I1W|1|3|C|35
9I1W|1|3|C|36
*
9I1W|1|3|G|41
9I1W|1|3|C|42
9I1W|1|3|U|43
9I1W|1|3|C|44
9I1W|1|3|U|45

Current chains

Chain 3

5S RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain LD

60S ribosomal protein l5-like protein

Chain LJ

Putative ribosomal protein