IL_9I3L_014

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I3L_014 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.0794

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9I3L|1|b|G|188
9I3L|1|b|G|189
9I3L|1|b|A|190
9I3L|1|b|A|191
9I3L|1|b|C|192
9I3L|1|b|U|193
9I3L|1|b|G|194
*
9I3L|1|b|C|201
9I3L|1|b|U|202
9I3L|1|b|A|203
9I3L|1|b|A|204
9I3L|1|b|G|205
9I3L|1|b|U|206
9I3L|1|b|A|207
9I3L|1|b|C|208

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28

Chain 7

Large ribosomal subunit protein bL35

Chain l

Large ribosomal subunit protein uL15