IL_9I3L_041

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9I3L|1|b|A|1145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I3L_041 not in the Motif Atlas

Homologous match to IL_7A0S_036

Geometric discrepancy: 0.2278

The information below is about IL_7A0S_036

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9I3L|1|b|U|1020
9I3L|1|b|U|1021
9I3L|1|b|A|1022
9I3L|1|b|A|1023
9I3L|1|b|G|1024
9I3L|1|b|U|1025
9I3L|1|b|G|1026
*
9I3L|1|b|C|1142
9I3L|1|b|U|1143
9I3L|1|b|A|1144
9I3L|1|b|A|1145
9I3L|1|b|A|1146

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain j

Large ribosomal subunit protein uL13