IL_9I3L_042
3D structure
- PDB id
- 9I3L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 9I3L|1|b|A|1129, 9I3L|1|b|U|1132
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I3L_042 not in the Motif Atlas
- Geometric match to IL_8B0X_101
- Geometric discrepancy: 0.0473
- The information below is about IL_8B0X_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9I3L|1|b|G|1026
9I3L|1|b|G|1027
9I3L|1|b|G|1028
9I3L|1|b|A|1029
9I3L|1|b|A|1030
9I3L|1|b|A|1031
9I3L|1|b|C|1032
*
9I3L|1|b|G|1126
9I3L|1|b|G|1127
9I3L|1|b|A|1128
9I3L|1|b|A|1129
9I3L|1|b|G|1130
9I3L|1|b|A|1131
9I3L|1|b|U|1132
9I3L|1|b|G|1133
9I3L|1|b|U|1134
9I3L|1|b|A|1135
9I3L|1|b|A|1136
9I3L|1|b|C|1137
9I3L|1|b|G|1138
9I3L|1|b|G|1139
9I3L|1|b|G|1140
9I3L|1|b|G|1141
9I3L|1|b|C|1142
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain a
- 5S ribosomal RNA; 5S rRNA
- Chain d
- 50S ribosomal protein L3
- Chain j
- Large ribosomal subunit protein uL13
- Chain m
- 50S ribosomal protein L16
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