IL_9I3L_049

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9I3L|1|b|C|1213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I3L_049 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1578

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9I3L|1|b|C|1210
9I3L|1|b|U|1211
9I3L|1|b|G|1212
9I3L|1|b|C|1213
9I3L|1|b|G|1214
9I3L|1|b|A|1215
9I3L|1|b|A|1216
9I3L|1|b|G|1217
*
9I3L|1|b|U|1236
9I3L|1|b|G|1237
9I3L|1|b|G|1238
9I3L|1|b|A|1239
9I3L|1|b|G|1240

Current chains

Chain b

23S rRNA

Nearby chains

Chain q

Large ribosomal subunit protein bL20