IL_9I3L_075

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9I3L|1|b|A|1803, 9I3L|1|b|C|1818, 9I3L|1|b|U|1822

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I3L_075 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1018

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9I3L|1|b|U|1800
9I3L|1|b|G|1801
9I3L|1|b|C|1802
9I3L|1|b|A|1803
9I3L|1|b|A|1804
9I3L|1|b|A|1805
9I3L|1|b|C|1806
*
9I3L|1|b|G|1815
9I3L|1|b|G|1816
9I3L|1|b|A|1817
9I3L|1|b|C|1818
9I3L|1|b|G|1819
9I3L|1|b|U|1820
9I3L|1|b|A|1821
9I3L|1|b|U|1822
9I3L|1|b|A|1823

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2