IL_9I3L_098

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

9I3L|1|b|U|2495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I3L_098 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.2014

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

9I3L|1|b|A|2463
9I3L|1|b|U|2464
9I3L|1|b|A|2465
*
9I3L|1|b|U|2493
9I3L|1|b|G|2494
9I3L|1|b|U|2495
9I3L|1|b|U|2496
9I3L|1|b|U|2497

Current chains

Chain b

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L16

Chain y

Large ribosomal subunit protein bL27