IL_9I5T_004
3D structure
- PDB id
- 9I5T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S subunit of P. gingivalis ribosome with Lefamulin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAAU*AAUUGAUC
- Length
- 13 nucleotides
- Bulged bases
- 9I5T|1|A|U|89
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5T_004 not in the Motif Atlas
- Geometric match to IL_4WF9_004
- Geometric discrepancy: 0.1369
- The information below is about IL_4WF9_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.2
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9I5T|1|A|G|70
9I5T|1|A|G|71
9I5T|1|A|A|72
9I5T|1|A|A|73
9I5T|1|A|U|74
*
9I5T|1|A|A|86
9I5T|1|A|A|87
9I5T|1|A|U|88
9I5T|1|A|U|89
9I5T|1|A|G|90
9I5T|1|A|A|91
9I5T|1|A|U|92
9I5T|1|A|C|93
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein uL29
- Chain X
- Large ribosomal subunit protein uL24
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