IL_9I5T_007

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_007 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0721

The information below is about IL_8B0X_071

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9I5T|1|A|U|217
9I5T|1|A|C|218
9I5T|1|A|A|219
9I5T|1|A|G|220
9I5T|1|A|U|221
9I5T|1|A|A|222
9I5T|1|A|G|223
*
9I5T|1|A|C|231
9I5T|1|A|G|232
9I5T|1|A|A|233
9I5T|1|A|A|234
9I5T|1|A|C|235
9I5T|1|A|G|236

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL35

Chain O

Large ribosomal subunit protein uL15