IL_9I5T_033

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUAAGUU*AUAAG

Length

12 nucleotides

Bulged bases

9I5T|1|A|A|1178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_033 not in the Motif Atlas

Geometric match to IL_9E6Q_045

Geometric discrepancy: 0.069

The information below is about IL_9E6Q_045

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9I5T|1|A|C|1051
9I5T|1|A|U|1052
9I5T|1|A|A|1053
9I5T|1|A|A|1054
9I5T|1|A|G|1055
9I5T|1|A|U|1056
9I5T|1|A|U|1057
*
9I5T|1|A|A|1175
9I5T|1|A|U|1176
9I5T|1|A|A|1177
9I5T|1|A|A|1178
9I5T|1|A|G|1179

Current chains

Chain A

23S rRNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL6

Chain 8

Large ribosomal subunit protein bL36

Chain M

Large ribosomal subunit protein uL13