IL_9I5T_034

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAG*CAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_034 not in the Motif Atlas

Geometric match to IL_9AXU_061

Geometric discrepancy: 0.2377

The information below is about IL_9AXU_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.3

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

12

Unit IDs

9I5T|1|A|G|1066
9I5T|1|A|A|1067
9I5T|1|A|A|1068
9I5T|1|A|G|1069
*
9I5T|1|A|C|1157
9I5T|1|A|A|1158
9I5T|1|A|U|1159

Current chains

Chain A

23S rRNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL6

Chain 8

Large ribosomal subunit protein bL36

Chain P

Large ribosomal subunit protein uL16