IL_9I5T_035

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAU*AAAG

Length

7 nucleotides

Bulged bases

9I5T|1|A|A|1277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_035 not in the Motif Atlas

Geometric match to IL_9E6Q_049

Geometric discrepancy: 0.1785

The information below is about IL_9E6Q_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

9I5T|1|A|C|1225
9I5T|1|A|A|1226
9I5T|1|A|U|1227
*
9I5T|1|A|A|1276
9I5T|1|A|A|1277
9I5T|1|A|A|1278
9I5T|1|A|G|1279

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL4

Chain O

Large ribosomal subunit protein uL15

Chain T

Large ribosomal subunit protein bL20