IL_9I5T_042

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AUAAG*CGAUU

Length

10 nucleotides

Bulged bases

9I5T|1|A|U|1402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_042 not in the Motif Atlas

Geometric match to IL_8OI5_120

Geometric discrepancy: 0.1004

The information below is about IL_8OI5_120

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08938.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

25

Unit IDs

9I5T|1|A|A|1386
9I5T|1|A|U|1387
9I5T|1|A|A|1388
9I5T|1|A|A|1389
9I5T|1|A|G|1390
*
9I5T|1|A|C|1399
9I5T|1|A|G|1400
9I5T|1|A|A|1401
9I5T|1|A|U|1402
9I5T|1|A|U|1403

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28

Chain 6

Large ribosomal subunit protein bL34

Chain D

Large ribosomal subunit protein uL2