IL_9I5T_045

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAG*CCGGC

Length

9 nucleotides

Bulged bases

9I5T|1|A|G|1596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_045 not in the Motif Atlas

Geometric match to IL_8B0X_115

Geometric discrepancy: 0.1614

The information below is about IL_8B0X_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28284.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

3

Unit IDs

9I5T|1|A|G|1462
9I5T|1|A|A|1463
9I5T|1|A|A|1464
9I5T|1|A|G|1465
*
9I5T|1|A|C|1594
9I5T|1|A|C|1595
9I5T|1|A|G|1596
9I5T|1|A|G|1597
9I5T|1|A|C|1598

Current chains

Chain A

23S rRNA

Nearby chains