IL_9I5T_049
3D structure
- PDB id
- 9I5T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S subunit of P. gingivalis ribosome with Lefamulin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAACUAGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5T_049 not in the Motif Atlas
- Geometric match to IL_8B0X_180
- Geometric discrepancy: 0.0408
- The information below is about IL_8B0X_180
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.2
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 11
Unit IDs
9I5T|1|A|G|1702
9I5T|1|A|G|1703
9I5T|1|A|A|1704
9I5T|1|A|A|1705
9I5T|1|A|C|1706
9I5T|1|A|U|1707
9I5T|1|A|A|1708
9I5T|1|A|G|1709
9I5T|1|A|G|1710
*
9I5T|1|A|C|2000
9I5T|1|A|U|2001
9I5T|1|A|G|2002
9I5T|1|A|U|2003
9I5T|1|A|C|2004
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3
- Chain N
- Large ribosomal subunit protein uL14
Coloring options: