IL_9I5T_051

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGUAAC*GGAGAAA

Length

13 nucleotides

Bulged bases

9I5T|1|A|G|1735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_051 not in the Motif Atlas

Geometric match to IL_8GLP_108

Geometric discrepancy: 0.0634

The information below is about IL_8GLP_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9I5T|1|A|U|1722
9I5T|1|A|G|1723
9I5T|1|A|U|1724
9I5T|1|A|A|1725
9I5T|1|A|A|1726
9I5T|1|A|C|1727
*
9I5T|1|A|G|1732
9I5T|1|A|G|1733
9I5T|1|A|A|1734
9I5T|1|A|G|1735
9I5T|1|A|A|1736
9I5T|1|A|A|1737
9I5T|1|A|A|1738

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2