IL_9I5T_056

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_056 not in the Motif Atlas

Geometric match to IL_9E6Q_071

Geometric discrepancy: 0.2274

The information below is about IL_9E6Q_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

9I5T|1|A|G|1855
9I5T|1|A|A|1856
9I5T|1|A|A|1857
9I5T|1|A|G|1858
*
9I5T|1|A|C|1903
9I5T|1|A|C|1904

Current chains

Chain A

23S rRNA

Nearby chains