IL_9I5T_062

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_062 not in the Motif Atlas

Geometric match to IL_7A0S_073

Geometric discrepancy: 0.1329

The information below is about IL_7A0S_073

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.9

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

9I5T|1|A|C|2060
9I5T|1|A|G|2061
9I5T|1|A|G|2062
*
9I5T|1|A|U|2618
9I5T|1|A|G|2619

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL32

Chain E

Large ribosomal subunit protein uL3