IL_9I5T_082
3D structure
- PDB id
- 9I5T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S subunit of P. gingivalis ribosome with Lefamulin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5T_082 not in the Motif Atlas
- Geometric match to IL_8B0X_161
- Geometric discrepancy: 0.0927
- The information below is about IL_8B0X_161
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.6
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9I5T|1|A|C|2653
9I5T|1|A|U|2654
9I5T|1|A|A|2655
9I5T|1|A|G|2656
9I5T|1|A|U|2657
9I5T|1|A|A|2658
9I5T|1|A|C|2659
*
9I5T|1|A|G|2664
9I5T|1|A|G|2665
9I5T|1|A|A|2666
9I5T|1|A|C|2667
9I5T|1|A|C|2668
9I5T|1|A|G|2669
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein uL6
- Chain 15
- DUF4295 domain-containing protein
Coloring options: