IL_9I5T_086
3D structure
- PDB id
- 9I5T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S subunit of P. gingivalis ribosome with Lefamulin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAUAAG*CGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 9I5T|1|A|A|2766
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5T_086 not in the Motif Atlas
- Geometric match to IL_7A0S_098
- Geometric discrepancy: 0.0772
- The information below is about IL_7A0S_098
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
9I5T|1|A|G|2738
9I5T|1|A|A|2739
9I5T|1|A|U|2740
9I5T|1|A|A|2741
9I5T|1|A|A|2742
9I5T|1|A|G|2743
*
9I5T|1|A|C|2763
9I5T|1|A|G|2764
9I5T|1|A|A|2765
9I5T|1|A|A|2766
9I5T|1|A|G|2767
9I5T|1|A|C|2768
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein uL6
- Chain 15
- DUF4295 domain-containing protein
- Chain 8
- Large ribosomal subunit protein bL36
- Chain M
- Large ribosomal subunit protein uL13
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