IL_9I5V_005
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UCAGG*UGACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5V_005 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.2883
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.5
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
9I5V|1|A|U|120
9I5V|1|A|C|121
9I5V|1|A|A|122
9I5V|1|A|G|123
9I5V|1|A|G|124
*
9I5V|1|A|U|133
9I5V|1|A|G|134
9I5V|1|A|A|135
9I5V|1|A|C|136
9I5V|1|A|A|137
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein uL29
- Chain W
- Large ribosomal subunit protein uL23
Coloring options: