IL_9I5V_013

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAGC*GUGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_013 not in the Motif Atlas

Geometric match to IL_8GLP_204

Geometric discrepancy: 0.2333

The information below is about IL_8GLP_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9I5V|1|A|G|559
9I5V|1|A|G|560
9I5V|1|A|A|561
9I5V|1|A|G|562
9I5V|1|A|C|563
*
9I5V|1|A|G|575
9I5V|1|A|U|576
9I5V|1|A|G|577
9I5V|1|A|A|578
9I5V|1|A|C|579

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

Large ribosomal subunit protein uL13

Chain T

Large ribosomal subunit protein bL20