IL_9I5V_024
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5V_024 not in the Motif Atlas
- Geometric match to IL_8B0X_090
- Geometric discrepancy: 0.072
- The information below is about IL_8B0X_090
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9I5V|1|A|G|890
9I5V|1|A|A|891
9I5V|1|A|G|892
9I5V|1|A|G|893
9I5V|1|A|U|894
9I5V|1|A|A|895
9I5V|1|A|G|896
*
9I5V|1|A|C|949
9I5V|1|A|G|950
9I5V|1|A|A|951
9I5V|1|A|A|952
9I5V|1|A|U|953
9I5V|1|A|G|954
9I5V|1|A|C|955
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein uL30
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain P
- Large ribosomal subunit protein uL16
- Chain Z
- Large ribosomal subunit protein bL27
Coloring options: