IL_9I5V_034

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAU*AAAG

Length

7 nucleotides

Bulged bases

9I5V|1|A|A|1277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_034 not in the Motif Atlas

Geometric match to IL_4WF9_044

Geometric discrepancy: 0.183

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_84227.1

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

9I5V|1|A|C|1225
9I5V|1|A|A|1226
9I5V|1|A|U|1227
*
9I5V|1|A|A|1276
9I5V|1|A|A|1277
9I5V|1|A|A|1278
9I5V|1|A|G|1279

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL4

Chain O

Large ribosomal subunit protein uL15

Chain T

Large ribosomal subunit protein bL20