IL_9I5V_036
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGUAGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 9I5V|1|A|A|1239
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5V_036 not in the Motif Atlas
- Geometric match to IL_4V9F_048
- Geometric discrepancy: 0.072
- The information below is about IL_4V9F_048
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.3
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
9I5V|1|A|C|1236
9I5V|1|A|G|1237
9I5V|1|A|U|1238
9I5V|1|A|A|1239
9I5V|1|A|G|1240
9I5V|1|A|A|1241
9I5V|1|A|A|1242
9I5V|1|A|G|1243
*
9I5V|1|A|U|1263
9I5V|1|A|G|1264
9I5V|1|A|G|1265
9I5V|1|A|A|1266
9I5V|1|A|G|1267
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain T
- Large ribosomal subunit protein bL20
- Chain V
- Large ribosomal subunit protein uL22
Coloring options: