IL_9I5V_041

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAUA*UGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_041 not in the Motif Atlas

Geometric match to IL_4X4T_003

Geometric discrepancy: 0.2295

The information below is about IL_4X4T_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39691.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

9I5V|1|A|G|1436
9I5V|1|A|A|1437
9I5V|1|A|U|1438
9I5V|1|A|A|1439
*
9I5V|1|A|U|1629
9I5V|1|A|G|1630
9I5V|1|A|U|1631
9I5V|1|A|U|1632

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

Large ribosomal subunit protein uL23