IL_9I5V_047
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGUAAC*GGAGAAA
- Length
- 13 nucleotides
- Bulged bases
- 9I5V|1|A|G|1735
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5V_047 not in the Motif Atlas
- Geometric match to IL_8GLP_108
- Geometric discrepancy: 0.0615
- The information below is about IL_8GLP_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.3
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
9I5V|1|A|U|1722
9I5V|1|A|G|1723
9I5V|1|A|U|1724
9I5V|1|A|A|1725
9I5V|1|A|A|1726
9I5V|1|A|C|1727
*
9I5V|1|A|G|1732
9I5V|1|A|G|1733
9I5V|1|A|A|1734
9I5V|1|A|G|1735
9I5V|1|A|A|1736
9I5V|1|A|A|1737
9I5V|1|A|A|1738
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: